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Documentation 1.7.0
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DIPY Workflows Interfaces
DIPY Workflows Interfaces
DIPY Workflows Interfaces
Introduction to command line interfaces
References
Downloading DIPY datasets
Denoising
Denoising using Overcomplete Local PCA
Denoising using Marcenko-Pastur PCA
Denoising using NLMEANS
Overview of Denoising Methods
Diffusion
Structural
References
Between-Volumes Motion Correction
Motion Correction
References
Gibbs Unringing
Suppress Gibbs Oscillations
References
Registration
Image Registration
Symmetric Diffeomorphic Registration
Apply a Transformation
Streamline-based Registration
References
Reconstruction
Constrained Spherical Deconvolution (CSD)
Mean Apparent Propagator (MAP)-MRI
Diffusion Tensor Imaging (DTI)
Diffusion Kurtosis Imaging (DKI)
Constant Solid Angle (CSA)
Intravoxel Incoherent Motion (IVIM)
References
Tracking
Local Fiber Tracking
EuDX Tracking
Deterministic Tracking
Probabilistic Tracking
Closest Peaks Tracking
Particle Filtering Tracking (PFT)
Overview of Fiber Tracking Methods
References
BUndle ANalytics (BUAN) framework
Group Comparison of Bundle Profiles
Shape similarity of specific bundles across the populations
Reproducing results on larger dataset:
White Matter Bundle Segmentation with RecoBundles
Streamline-Based Linear Registration
RecoBundles
References
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The department of Intelligent Systems Engineering of Indiana University
The National Institute of Biomedical Imaging and Bioengineering, NIH
The Gordon and Betty Moore Foundation and the Alfred P. Sloan Foundation, through the University of Washington eScience Institute Data Science Environment
Google supported DIPY through the Google Summer of Code Program during Summer 2015, 2016, 2018
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