GitHub stats for 2022/03/11 - 2023/01/12 (tag: 1.5.0) These lists are automatically generated, and may be incomplete or contain duplicates. The following 15 authors contributed 242 commits. Ariel Rokem David Romero-Bascones Deneb Boito Eleftherios Garyfallidis Emmanuelle Renauld Eric Larson Francois Rheault Jacob Roberts Jon Haitz Legarreta Gorroño Malinda Dilhara Omar Ocegueda Sam Coveney Serge Koudoro Shreyas Fadnavis Tom Dela Haije We closed a total of 116 issues, 41 pull requests and 75 regular issues;
this is the full list (generated with the script
Pull Requests (41): PR #2710: small fixes for tutorials PR #2711: [FIX] use tempfile module instead of nibabel for TemporaryDirectory PR #2702: One more small fix to the hcp fetcher. PR #2704: MAINT: Fixes for 3.11 and sdist PR #2701: FIX: Don’t print a progbar for downloading unless you need to. PR #2700: [FIX] incompatible type in numpy array PR #2694: NF: Add RUMBA-SD reconstruction workflow PR #2697: NF: Adds a fetcher for HCP data. PR #2692: RF: Improve multi-shell RUMBA test WM response parameterization PR #2693: TEST: Fix Node.js warnings linked to GitHub actions PR #2687: DOC: Fix typos in SH theory documentation page PR #2690: STYLE: Remove unnecessary b-val print in CSD reconstruction flow PR #2688: DOC: Document Dirac delta generation method missing member PR #2683: DOC: Adds missing documentation for a kwarg. PR #2668: ENH: Make the DTI fit CLI metric saving message accurate PR #2674: Improve doc (tensor values’ order) PR #2670: ENH: Allow non-default parameters to Patch2Self CLI PR #2672: DOC: Miscellaneous docstring fixes PR #2669: DOC: Remove inaccurate patch2self docstring default values PR #2664: DOC: Fix DTI fit CLI docstring PR #2553: NF: Unbiased groupwise linear bundle registration PR #2369: Transform points with DiffeormorphicMap PR #2631: [FIX] Allow patch size parameter to be an int on denoise Workflow PR #2630: [DOC] Remove search index PR #2629: [FIX ] Handle save VTP PR #2618: Use np.linalg.multi_dot instead of multiple np.dot routines PR #2606: STYLE: Fix miscellaneous Python warnings PR #2600: Pin Ray PR #2531: NF: MAP+ constraints PR #2589: Switch from using nibabel InTemporaryDirectory to standard library tmpfile module PR #2577: Add positivity constraints to QTI PR #2595: Temporary skip Cython 0.29.29 PR #2591: STYLE: Avoid array-like mutable default argument values PR #2592: STYLE: Fix miscellaneous Python warnings PR #2579: Generalized PCA to less than 3 spatial dims PR #2584: transform_streamlines changes dtype to float64 PR #2566: [FIX] Update tests for the deprecated dipy.io.bvectxt module PR #2581: Fix logger in SFT PR #2580: DOC: Fix typos and grammar PR #2576: DOC: Documentation fixes PR #2568: DOC: Fix the docstring of write_mapping Issues (75): #2710: small fixes for tutorials #2711: [FIX] use tempfile module instead of nibabel for TemporaryDirectory #2709: DiffeomorphicMap object on github not the same as recent release #2708: Provide the dataset of this code #2699: WIP: Single shell/noreg redux #2702: One more small fix to the hcp fetcher. #2704: MAINT: Fixes for 3.11 and sdist #2701: FIX: Don’t print a progbar for downloading unless you need to. #2700: [FIX] incompatible type in numpy array #2694: NF: Add RUMBA-SD reconstruction workflow #2696: Port HCP fetcher from pyAFQ into here #2697: NF: Adds a fetcher for HCP data. #2692: RF: Improve multi-shell RUMBA test WM response parameterization #2693: TEST: Fix Node.js warnings linked to GitHub actions #1418: Adding parallel_voxel_fit decorator #2687: DOC: Fix typos in SH theory documentation page #2690: STYLE: Remove unnecessary b-val print in CSD reconstruction flow #2688: DOC: Document Dirac delta generation method missing member #2683: DOC: Adds missing documentation for a kwarg. #2679: Problems with a .nii.gz file when loading and floating #2676: Does #2668: ENH: Make the DTI fit CLI metric saving message accurate #2674: Improve doc (tensor values’ order) #2670: ENH: Allow non-default parameters to Patch2Self CLI #2673: ENH: Doc: DTI format #2667: Defaults for Patch2Self #2672: DOC: Miscellaneous docstring fixes #2669: DOC: Remove inaccurate patch2self docstring default values #2662: Update cmd_line dipy_fit_dti #2664: DOC: Fix DTI fit CLI docstring #2658: Any chance of arm64 wheels for Mac / Python 3.10? #2659: Angle var #2649: IVIM VarPro fitting running error #2553: NF: Unbiased groupwise linear bundle registration #2424: Transforming individual points with SDR #2327: Diffeomorphic transformation of coordinates #2313: deform_streamlines for wholebrain tractogram doesn’t function properly #936: WIP: coordinate mapping with DiffeomorphicMap #2369: Transform points with DiffeormorphicMap #2616: dti TensorModel fitting issue #2627: Free-Water Analysis Gradient Table Error #2635: get_flexi_tvis_affine(tvis_hdr, nii_aff) #2634: Fix small difference between pdfs dense 2d/3d #2559: CLI denoise patch_size error #2631: [FIX] Allow patch size parameter to be an int on denoise Workflow #2564: Search, index, module links not working in the doc #2630: [DOC] Remove search index #2572: Saving vtp file error #2629: [FIX ] Handle save VTP #2622: Error with Illustrating Electrostatic Repulsion #2618: Use np.linalg.multi_dot instead of multiple np.dot routines #2617: DKI model fit shape broadcast error #2606: STYLE: Fix miscellaneous Python warnings #2602: Dear experts, how can I set different number of fiber tracks before generating streamlines? #2603: Dear experts, how to save dti_peaks? #2600: Pin Ray #2531: NF: MAP+ constraints #2587: Thread safety concerns with reliance on nibabel.tmpdirs.InTemporaryDirectory #2589: Switch from using nibabel InTemporaryDirectory to standard library tmpfile module #2577: Add positivity constraints to QTI #2450: [NF] New tracking Algorithm: Parallel Transport Tractography (PTT) #2594: DIPY compilation fails with the last release of cython (0.29.29) #2595: Temporary skip Cython 0.29.29 #2591: STYLE: Avoid array-like mutable default argument values #2592: STYLE: Fix miscellaneous Python warnings #2579: Generalized PCA to less than 3 spatial dims #2584: transform_streamlines changes dtype to float64 #2566: [FIX] Update tests for the deprecated dipy.io.bvectxt module #2581: Fix logger in SFT #2580: DOC: Fix typos and grammar #2576: DOC: Documentation fixes #2573: Cannot Import “Feature” From “dipy.segment.metric” #2568: DOC: Fix the docstring of write_mapping #2567: This should be a 1 #2565: compress_streamlines() not available anymoreRelease notes for DIPY version 1.6
tools/github_stats.py):
`convert_sh_to_legacy` work as intended ?