What is DIPY?

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

DIPY is easy to install:

Available on many operating systems

Command-Line Interfaces

All Algorithms available via CLI

Create your Own

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Statistical Analysis

BUAN

AFQ

K-Fold cross validation

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Reconstruction

Single Shell: DTI, CSA, SFM, SDT, Q-Ball, CSD, ...

Multi-Shell: GQI, DTI, DKI, SHORE, MAPMRI, MSMT-CSD, ...

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Registration

Affine Registration

Diffeomorphic 2D/3D Registration

Streamlines based Registration

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Tractography

Probabilistic Tracking

Deterministic Tracking

PFT Tracking

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Datasets

HCP Tractogram

CFIN Datasets

High resolution DWI

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Denoising

Patch2self

Gibbs Unringing

LPCA - MPPCA

Non Local Means

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Visualization

ODFs visualization

interactive tractogram visualization

Advanced UI and Shaders

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Pre-Processing

Brain extraction

SNR estimation

Reslice Datasets

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Announcements


See some of our Past Announcements

Highlights


DIPY 1.7.0 is now available. New features include:

  • NF: BundleWarp - Streamline-based nonlinear registration method for bundles added.

  • NF: DKI+ - Diffusion Kurtosis modeling with advanced constraints added.

  • NF: Synb0 - Synthetic b0 creation added using deep learning added.

  • NF: New Parallel Transport Tractography (PTT) added.

  • NF: Fast Streamline Search algorithm added.

  • NF: New denoising methods based on 1D CNN added.

  • Handle Asymmetric Spherical Functions.

  • Large update of DIPY Horizon features.

  • Multiple Workflows updated

  • Large codebase cleaning.

  • Large documentation update. Integration of Sphinx-Gallery.

  • Closed 53 issues and merged 34 pull requests.

See Older Highlights.

Tweets

Cite Us !


Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, vol.8, no.8.

Sponsors


DIPY - NIH / NIBIB
DIPY - Indiana University
DIPY - GSOC
IU
DIPY - EWU